view:36007 Last Update: 2024-8-4
International ISI | 56.
Ziba Mirzaee, Vahab Jafarian, Khosrow Khalifeh
Enhancement of the structure and biochemical function of cyclomaltodextrinase from the Anoxybacillus flavithermus ZNU-NGA with site-directed mutagenesis International Microbiology (2024) DOI: https://doi.org/10.1007/s10123-024-00554. |
International ISI | 55.
Ashraf Asadi, S. Akram Shirdel, Vahab Jafarian and Khosrow Khalifeh*
An in silico analysis on the photoproteins Mnemiopsin 1 and Mnemiopsin 2 to explain the experimental results Luminescence (2023) DOI: https://doi.org/10.1002/bio.4584. |
International ISI | 54.
Yasmin Rahmati, Khosrow Khalifeh and Emran Heshmati
Dynamic behavior and ligand binding properties of the wild type Deoxycytidine kinase and its characterized gemcitabine-resistant variant: A bioinformatics and computational study Journal of Computational Biophysics and Chemistry (2023) DOI: https://doi.org/10.1142/S273741652350048. |
International ISI | 53.
Saba Habibi, Mohammad Yaghoubzad-maleki- emran Heshmati and Khosrow Khalifeh*
Effects of Representative Point Mutations on Dynamic Behavior of the DISC1-Ndel1 Complex: A Molecular Dynamics Study Journal of Biomolecular Structure and Dynamics (2023) DOI: 10.1080/07391102.2023.2183030. |
International ISI | 52.
Mohammad Yaghoubzad-Maleki, Saba Habibi, Emran Heshmati and Khosrow Khalifeh*
Bioinformatics and Molecular dynamics studies on the human DISC1 in complex with the Ndel1 Journal of Computational Biophysics and Chemistry Vol. 22 Issue 2 (2023) PP. 147-156 DOI: 10.1142/S2737416523500084. |
International ISI | 51.
Akram Shirdel, Khosrow Khalifeh*
Chapter 12: Spectroscopic methods to study protein folding kinetics: Methodology, data analysis, and interpretation of the results. (Book title: Advanced Spectroscopic Methods to Study Biomolecular Structure and Dynamics) Academic Press (Elsevier) (2022) PP. 357-371 DOI: 10.1016/B978-0-323-99127-8.00008-8. |
International ISI | 50.
Akram shirdel and khosrow khalifeh*
Chapter 25: Chondroitinase ABC I as a novel candidate for reducing damage in spinal cord injury. (Book Tilte: Diagnosis and Treatment of Spinal Cord Injury) Academic Press (Elsevier) (2022) PP. 325-335 DOI: 10.1016/B978-0-12-822498-4.00025-7. |
International ISI | 49.
Mahsa Pourahmadi, Akram Shirdel, Nazanin Jamshidi, Vahab Jafarian and Khosrow Khalifeh*
Comparing similar versions of a connecting helix on the structure of Chondroitinase ABC I Enzyme and Microbial Technology (2022) . |
International ISI | 48.
Elahe Karimi, Emran Heshmati & Khosrow Khalifeh*
Evolutionary adaptation of DHFR via expression of enzyme isoforms with various binding properties and dynamics behavior: a bioinformatics and computational study Biological Chemistry (2021) DOI: 10.1515/hsz-2021-0346. |
International ISI | 47.
Robabeh Nemati, Maryam Molakarimi, Ammar Mohseni, Majid Taghdir, Khosrow Khalifeh, and Reza H. Sajedi
Thermostability of Ctenophore and Coelenterate Ca2+-Regulated Apo-photoproteins: A Comparative Study ACS Chemical Biology (2021) DOI: https://doi.org/10.1021/acschembio.1c004. |
International ISI | 46.
Mohammad Hossein Olyaee, Alireza Khanteymoori, khosrow khalifeh
A chaotic viewpoint-based approach to solve haplotype assembly using hypergraph model PLOS ONE (2020) PP. 1-22 DOI: 10.1101/2020.09.29.318907. |
International ISI | 45.
Mohammad Hossein Olyaee, Jamshid Pirgazi, Khosrow Khalifeh, Alireza Khanteymoori
RCOVID19: Recurrence-based SARS-CoV-2 features using chaos game representation Data in Brief (2020) DOI: 10.1016/j.dib.2020.106144. |
International ISI | 44.
Nazanin Jamshidi, Akram Shirdel, Mahsa Pourahmadi, Vahab Jafarian & Khosrow Khalifeh*
Bioinformatics and experimental studies on the structural roles of a surface-exposed α-helix at the C-terminal domain of Chondroitinase ABC I international journal of Biological Macromolecules (2020) DOI: 10.1016/j.ijbiomac.2020.07.165. |
International ISI | 43.
Hanieh Moghaddasi, Soghra Rezaei, Amir Hossein Darooneh, Emran Heshmati, Khosrow Khalifeh*
A comparative analysis of dipeptides distribution in eukaryotes and prokaryotes by statistical mechanics Physica A: Statistical Mechanics and its Applications (2020) DOI: 10.1016/j.physa.2020.124567. |
International ISI | 42.
Jamshid Mehrvand, Nasim Hayati Roodbari, Leila Hasani, Vahab Jafarian & Khosrow Khaliifeh*
An evolution-based designing and characterization of mutants of cyclomaltodextrinase: Molecular modeling and spectroscopic studies SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY (2020) DOI: 10.1016/j.saa.2020.118055. |
International ISI | 41.
Maryam Hosseinnia, Khosrow Khalifeh and VahabJafarian
Polarity change of a representative helix in coelenterazin-binding cavity of mnemiopsin 2: Functional and structural consequences Journal of Molecular Structure (2019) DOI: 10.1016/j.molstruc.2019.127279. |
International ISI | 40.
Ziba Mirzaee, Vahab Jafarian, Seyedeh Akram Shirdel and Khosrow Khalifeh*
Structural and functional consequences of replacement of His403 with Arg near the catalytic site of Anoxybacillus flavithermus cyclomaltodextrinase Enzyme and microbial technology (2019) DOI: 10.1016/j.enzmictec.2019.109421. |
International ISI | 39.
Mohammad Hossein Olyaee, Alireze Khanteymoori & Khosrow Khalifeh
Application of Chaotic Laws to Improve Haplotype Assembly Using Chaos Game Representation Scientific Reports Vol. 9 Issue 10361 (2019) DOI: 10.1038/s41598-019. |
International ISI | 38.
Hamed Mohammadyari, S. Akram Shirdel, Vahab Jafarian & Khosrow Khalifeh*
Designing and construction of novel variants of Chondroitinase ABC I to reduce aggregation rate Archives of Biochemistry and Biophysics (2019) DOI: 10.1016/j.abb.2019.05.013. |
International ISI | 37.
S. Akram Shirdel, Khosrow Khalifeh*
Thermodynamics of protein folding: methodology, data analysis and interpretation of data European Biophysics Journal (2019) PP. 1-12 DOI: 10.1007/s00249-019-01362-7. |
International ISI | 36.
Roghayeh Mohammadi, Seyedeh Akram Shirdel, Vahab Jafarian and Khosrow Khalifeh*
Molecular mechanisms governing the evolutionary conservation of Glycine in the 6th position of loops ΙΙΙ and ΙV in photoprotein mnemiopsin 2 Journal of Photochemistry and Photobiology B: Biology Accepted 2018. |
International ISI | 35.
Vahab Jafarian, Reze hasan sajedi, Saman Hosseinkhani, Reyhaneh sariri, Majid taghdir, Khosrow Khalifeh, Masoomeh vafa, Mohmood reza Aghamaali
Structural and functional consequences of EF-hand I recovery in mnemiopsin 2 International Journal of Biological Macromolecules Accepted 2018. |
International ISI | 34.
Neda Aliakbari, Ziba Mirzaei, Vahab Jafarian, Khosrow Khalifeh & Mehdi Salehi
Genetic and biochemical characterization of a novel thermostable cyclomaltodextrinase from Anoxybacillus flavithermus Starch/Stark (2018) DOI: 10.1002/star.201800133. |
International ISI | 33.
Himan Mohamadnejhadi, Alireza Beiramzadeh, Muhammad Shadman, Khosrow Khalifeh* and Emran Heshmati
Temperature dependent dynamics in highly homologous adenylate kinases Journal of Biomolecular Structure and Dynamics Accepted 2018. |
International ISI | 32.
Masoomeh Vafa, Khosrow Khalifeh & Vahab Jafarian
Negative net charge of EF-hand loop I can affectboth calcium sensitivity and substrate binding pattern in mnemiopsin 2 Photochemical and photobiological sciences (2018) DOI: 10.1039/c8pp00058a. |
International ISI | 31.
Mahin Ghadimi, Emran Heshmati* & Khosrow Khalifeh*
Distribution of dipeptides in different protein structural classes: An effort to find new similarities European Buiophysics Journal Issue 47 (2018) PP. 38-31 DOI: 10.1007/s00249-017-1226-6. |
International ISI | 30.
Yasaman Mahmoodi, Faramarz Mehrnejad & Khosrow Khalifeh
Understanding the interactions of human follicle stimulating hormone with single-walled carbon nanotubes by molecular dynamics simulation and free energy analysis european Biophysics Journal (2018) PP. 49-57 DOI: 10.1007/s00249-017-1228-4. |
International ISI | 29.
Mahsa Ebrahimi, Ammar Mohseni, Khosrow Khalifeh*, Bijan Ranjbar, Reza H Sajedi*
Evolutionary Conservation of EF-hand Loop II in Aequorin: Priority of Intensity to Decay Rate in Bioluminescence Emission. Archives of Biochemistry and Biophysics (2017) DOI: https://doi.org/10.1016/j.abb.2017.09.01. |
International ISI | 28.
Khadijeh Moradi, S. Akram Shirdel, Masoumeh shamsi, Vahab Jafarian & Khosrow khalifeh*
investigating the structural and functional features of representative recombinants of Chondroitinase ABC I Enzyme and microbial technology (2017) DOI: https://doi.org/10.1016/j.enzmictec.2017. |
International-ISI | 27.
Mahin Ghadimi, Khosrow Khalifeh & Emran Heshmati
Neighbor effect and local conformation in protein structures Amino Acids (2017) DOI: 10.1007/s00726-017-2463-9. |
International-ISI | 26.
Hanieh Moghaddasi, Khosrow Khalifeh, Amir-Hossein Darooneh
Distinguishing Functional DNA Words; A method for measuring clustering levels Scientific Reports Vol. 7: 41543 (2017) P. 8 DOI: 10.1038/srep41543. |
International-ISI | 25.
Parisa Ghanavatian, Khosrow Khalifeh, Vahab Jafarian
Structural features and activity of Brazzein and its mutants upon substitution of a surfaced exposed alanine Biochimie (2016) DOI: 10.1016/j.biochi.2016.09.006. |
International-ISI | 24.
S. Akram Shirdel, Khosrow Khalifeh, Bijan Ranjbar, Abolfazl Golestani
Unfolding of Chondroitinase I is dependent on thermodynamic driving force by kinetically Rate constant-amplitude compensation: a stopped flow fluorescence study Enzyme and Microbial Technology (2016) DOI: http://dx.doi.org/10.1016/j.enzmictec.20. |
International-ISI | 23.
Zahra Solgi, Khosrow Khalifeh, Saman Hosseinkhani & Bijan Ranjbar
Surface arginine saturation effect on unfolding reaction of firefly luciferase: A Thermodynamic and Kinetic Perspective Photochemistry and Photobiology (2016) DOI: 10.1111/php.12614. |
International-ISI | 22.
Malek Hossein Asadi, Khosrow Khalifeh, Seyed Javad Mowla
OCT4 spliced variants are highly expressed in brain cancer tissues and inhibition of OCT4B1 causes G2/M arrest in brain cancer cells Journal of Neuro-oncology (2016) DOI: 10.1007/s11060-016-2255-1. |
International-ISI | 21.
S. Shahrbanoo Jafari, Vahab Jafarian, Khosrow Khalifeh, Parisa Ghanavatian & S. Akram Shirdel.
The effect of charge alteration and flexibility on the function and structural stability of seet-tasting Brazzein RSC Advances (2016) DOI: 10.1039/C6RA12626J. |
International-ISI | 20.
Masoumeh Shamsi, S. Akram Shirdel, Vahab Jafarian, Shahrbanoo Jafari, Khosrow Khalifeh* and Abolfazl golestani.
Optimization of Conformational Stability and Catalytic Efficiency in Chondroitinase ABC I by Protein Engineering Methods. Engineering in Life Sciences (2016) DOI: 10.1002/else.201600034. |
International-ISI | 19.
Forough Hakiminina, Maryam Molakarimi, Khosrow Khalifeh, Zohreh Jahani, Reza H sajedi, Bijan Rnajbar
Adjustment of local conformational flexibility and accessible surface area alterations of Serine128 and Valine183 in Mnemiopsine Journal of Molecular Structure (2016) PP. 292-287. |
International-ISI | 18.
Forough Hakiminia, Khosrow Khalifeh, Reza Hasan Sajedi, Bijan Ranjbar
Determination of structural elements on the folding reaction of Mnemiopsin by spectroscopic techniques. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy Vol. 158 (2016) PP. 55-49 DOI: 10.1016j.saa.2016.01.020. |
International-ISI | 17.
S. Akram Shirdel, Khosrow Khalifeh, Abolfazl Golestani, Bijan Ranjbar and Khosrow Khajeh.
critical role of a loop at C-terminal domain on the conformational stability and catalytic efficiency of chondroitinase ABC I Molecular Biotechnology (2015) DOI: 10.1007/s12033-015-9864-3. |
International-ISI | 16.
Ahmad Fazeli; Mohadeseh Haji-Abdolvahab, Seyad abbas Shojaosadati, Huub Schellekens, Khosrow Khalifeh, Ali Akbar Moosavi Movahedi, Mohammad Reza Fazeli.
Effect of Arginine on pre-nucleus Stage of Interferon Beta-1b Aggregation APPS PharmSci Tech (2014) PP. 1-11 DOI: 10.1208/s12249-014-0192-x. |
International-ISI | 15.
Forough Hakiminia, Bijan Ranjbar, Khosrow Khalifeh, khosro khajeh
Kinetic and thermodynamic properties of pseudomonas fluorescence lipase upon addition of proline International Journal of biological macromolecules Vol. 55 (2013) PP. 123-126. [Abstract ![]() |
International-ISI | 14.
Ahmad Fazeli, Seyed Abbas Shojaosadati, Mohammad Reza Fazeli, Khosrow Khalifeh, Shohreh Ariaeenejad, Ali Akbar Moosavi-Movahedi
The role of trehalose for metastable state and functional form of recombinant interferon beta-1b Journal of Biotechnology Vol. 163 Issue 3 (2013) PP. 318-324. [Abstract ![]() |
International-ISI | 13.
Khosrow Khalifeh, Bijan Ranjbar, Bagher Said Alipour & Saman Hosseinkhani
The effect of surface charge balance on thermodynamic stability and kinetics of refolding of firefly luciferase Biochemistry and Molecurar Biology Reports Vol. 44 Issue 2 (2011) PP. 102-106. [Abstract ![]() |
International-ISI | 12.
Tahereh Tohidi Moghadam, Bijan Ranjbar, Khosro Khajeh, Seyad Masoud Etezad, Khosrow Khalifeh, Mohamad Reza Ganjalikhany
Interaction of lysozyme with gold nanorods: conformation and activity investigations International Journal of Biological Macromolecules Vol. 49 (2011) PP. 629-636. [Abstract ![]() |
International-ISI | 11.
Najmeh Hadizadeh Shirazy, Bijan Ranjbar*, Saman Hosseinkhani, Khosrow Khalifeh, Ali Riahi Madvar and Hossein Naderi-Manesh
Critical Role of Glu175 on Stability and Folding of Bacterial Luciferase: Stopped-flow Fluorescence Study Journal of Biochemistry and Molecular Biology Vol. 40 Issue 4 (2007) PP. 453-458. [Abstract ![]() |
International-ISI | 10.
Mohamad Reza Ganjalikhany, Bijan Ranjbara, Saman Hosseinkhani, Khosrow Khalifeh, Leila Hassani
Roles of trehalose and magnesium sulfate on structural and functional stability of firefly luciferase Journal of Molecular Catalysis B: Enzymatic Vol. 62 Issue 2 (2010) PP. 127-132. [Abstract ![]() |
International-ISI | 9.
Khosrow Khalifeh, Bijan Ranjbar, Khosro Khajeh, Hossein Naderi-Manesh,Mehdi Sadeghi & Sara Gharavi
A stopped-flow fluorescence study of the native and modified lysozyme Biologia:Cellular & Molecular Biology Vol. 62 Issue 3 (2007) PP. 258-264. [Abstract ![]() |
International-ISI | 8.
Khosrow Khalifeh & Bijan Ranjbar
Application of quantum dots in quantitative proteomics for multiplex colour system assay Medical Hypotheses Vol. 67 (1) Issue 2 (2006) PP. 203-204. |
International ISI | 7.
Khosrow Khalifeh & Bijan Ranjbar
A novel application of quantum dots as a tool for storage of CD spectra data in proteomics Medical Hypotheses Vol. 65 Issue 4 (2005) PP. 821-822. |
داخلي-ISC | 6.
جمشید مهروند- نسیم حیاتی رودباری-لیلا حسنی- وهب جعفریان- خسرو خلیفه*
بررسی بیوترمودینامیکی آنزیم سیکلوکالتودکستریناز بومی و برخی جهشیافتههای آن Jamshid Mehrvand- Nasim Hayati roodbari- leila hasani- Vahab Jafarian- Khosrow Khalifeh*
مجله پژوهشهای سلولی و ملکولی (1401) . |
داخلي-ISC | 5.
Yasaman Mahmoodi, Faramarz Mehrnejad, Khosrow Khalifeh
مطالعه برهمکنش نانولوله کربنی دودیواره با هورمون محرکه فولیکولی (FSH) به کمک شبیه سازی دینامیک مولکولی Study of the Interaction of Double-Walled Carbon Nanotubes with Follicle-Stimulating Hormone: A Molecular Dynamics Simulation
مجله پژوهشهای سلولی و مولکولی دوره 32 شماره 3 (1398) صفحات 709-717. |
داخلي-ISC | 4.
Forough Hakiminia, Khosrow Khalifeh, Reza Hassan-Sajedi, Bijan Ranjbar
~تاثیر جایگزینی اسیدآمینه آرژینین ۳۹ با لیزین بر واسرشتگی گرمایی فتوپروتئین نمیوپسین 1 Effect of Replacement of Arginine 39 with Lysine on the Heat Denaturation of Mnemiopsin 1
زیستفناوری دانشگاه تربیت مدرس دوره 9 شماره 3 (1397) صفحات 457-451. |
داخلي-ISC | 3.
Zahra Solgi, Khosrow Khalifeh, Saman Hosseinkhani, Bijan Ranjbar
مقایسه پایداری ترمودینامیک و بازتاخوردگی مقایسه پایداری ترمودینامیک و بازتاخوردگی سینتیک آنزیم لوسیفراز گونه ایرانی و برخی جهش یافته های آن Comparison of Thermodynamic Stability and Kinetic of Refolding of Lampyris turkestanicus and Some of Its Mutants
زیست فناوری دانشگاه تربیت مدرس دوره 9 شماره 3 (1397) صفحات 417-425. |
داخلي-ISC | 2.
Forough Hakiminia, Khosrow Khalifeh, Khosro Khajeh, Bijan Ranjbar
بررسی اثزات سینتیکی و ترمودینامیکی سوربیتول بر روی سودوموناس فلوئورسانس لیپاز investigating the kinetic and thermodynamic effects of sorbitol on pseudomonas fluorescence lipase
زیستفناوری دانشگاه تربیت مدرس دوره 7 شماره 1 (1395) صفحات 50-60. |
داخلي-ISC | 1.
khosrow Khalifeh*, Seyedeh Akram Shirdel, Mahsa Alemi
مباحث نوین در زیستشناسی: پروتئومیکس و نانوزیستفناوری New Topics in Biology: Proteomics and Nanobiotechnology
زیست فناوری دانشگاه تربیت مدرس دوره 4 شماره 2 (1392) صفحات 22-9. [Abstract![]() |